Scaffold Ga0114964_10000290

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10000290
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39096
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019602	Metagenome / Metatranscriptome	228	N
F022413	Metagenome / Metatranscriptome	214	N
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_100002901	F022413	N/A	KPKLTNTLDAKQFETFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFA*
Ga0114964_100002906	F100405	AGGA	MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKLAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT*
Ga0114964_100002907	F019602	GGA	MDDRAVIERYILEAWDKGLTGTDVINYVQYMSSVPVFEIEPVLQNLIARMSE*