Scaffold Ga0114964_10000069

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10000069
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73258
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (58.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004153	Metagenome / Metatranscriptome	450	Y
F028513	Metagenome / Metatranscriptome	191	Y
F054873	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_1000006924	F028513	AGGAG	MLNALAEYFHKMFQRFEKPQTYGSALEEYIVRNSPQNSCDVDRLTRQFDLRQSGRGW*
Ga0114964_1000006931	F004153	AGGA	MAGWAFPHTKPYVNLGNDLTKFRLPIAQIEQVAGVKFAFPTKAQELAPGAEWPVNYGDLTKAKRAKCGANAAD*
Ga0114964_1000006952	F054873	N/A	MRAREFTINIPINIKINGDGEPEIDMGQDAPIDPSEPKQDPVMVPPLQQQIELQKADVGKISPIIKDLTQDEVDPETKQLP*