NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098047_10318811

Scaffold Ga0098047_10318811


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10318811 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041246Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0098047_103188111F041246GAGMKYVFGVIKRYNYTKSENHTRKGRKHYFCYEFDMESGKFRRVRISLFKAIYYKITFVFGLKTKIITNVY

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