NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098047_10235762

Scaffold Ga0098047_10235762


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10235762 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002744Metagenome / Metatranscriptome533Y
F043153Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0098047_102357621F043153N/AVAKMPHDTGEIQPSKVKSVSVYNVGDYGNDMFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAVYSDTDTG
Ga0098047_102357622F002744N/APICGATVIYDTDGPNDVESYYTRPTNETAGATAANTRTEGGSMTIQGGNEIRSLYTVVSGATASASQHDVGYSEFISPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRN*

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