Scaffold Ga0098047_10196748

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0098047_10196748

Scaffold Ga0098047_10196748

Overview

Basic Information
Taxon OID	3300010155 Open in IMG/M
Scaffold ID	Ga0098047_10196748 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	773
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.201	Alt. (m)		Depth (m)	170
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021117	Metagenome	220	Y
F049685	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_101967482	F021117	GGA	MGLKRDEMFQATRVLNLLVGLLNIYLYSLGGGYHLLGIAMLNVAAWAFTRGVYK*
Ga0098047_101967483	F049685	GGA	MDKNVKDVMAEMLAEWLFKDFGILIDEPSEKEIAETLEEHKREMLTNGVKKR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.