Scaffold Ga0098047_10101698

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10101698
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043139	Metagenome	157	Y
F087888	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_101016981	F087888	N/A	LKKKGTPVDDRGPNDLTKQIEVLEFRNEKLHNYNEKLIEEVRSLRSKLYVKGN*
Ga0098047_101016983	F043139	GGA	MAYKNPKDPEVLKKRAEMDFAYMNTERGFIMSCIARKFKPSAKKYGGHHAHESMDKKEFWRLYMNHIIDMKEKFPDSDGRLCRYCEQPFTFETRMGTRGKGQPSN