Scaffold Ga0098047_10075131

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10075131
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088726	Metagenome	109	Y
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_100751311	F103082	N/A	MKNPTATRKKKRPTVKQLSGDVESLWNGMMYLDKSITTMQRFFEEYLVMKNDVEKFMEHFEGRIENAKKSKEHTEG*
Ga0098047_100751312	F088726	AGAAGG	MNKQDIIGHVLIKFSESEIDLLLTALYNTERIDIPRVKSKWKRPYTNLIKELLIIRKTIEKEKEKQQ*
Ga0098047_100751314	F099127	AGGA	LTDSPAYYDLSGDSGGGKLPAGNYEAIIVDMSIVTDIKCGVFIADVFKPVYRVTAGDHKHMEVIDNGIFRYKQVDGYEYESNKNWGFAKFMQMLGMYNKKDGRVNLPYITKNDVSQKRVRIMVWDKSFINEIGDRISYPVARAISLINEVPF*