Scaffold Ga0098047_10070028

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10070028
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1375
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F021554	Metagenome / Metatranscriptome	218	N
F073651	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_100700281	F073651	N/A	NVQVICKQVGGGEGDFTYINKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYISPAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMVDTGIGL*
Ga0098047_100700282	F021554	AGG	MIIEEIPFFTEFVILGLVLGFGYGFTKLFLNHAKDKNKIIRKEKKVENDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV*
Ga0098047_100700283	F002150	AGG	MVAIQSVGLARGIGKRGTKASGEFLEKKLGYNFVDLVTKLTLFYVIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTAPGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLIIGVLSFSKCLGKFSLNRFQEEHK*