Scaffold Ga0098047_10038181

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10038181
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1908
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F004879	Metagenome / Metatranscriptome	420	Y
F039829	Metagenome / Metatranscriptome	163	Y
F049689	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_100381811	F004879	N/A	SKGMELKLHQREHFESKIDKLLEPEIEREELKLKTTINKILDKGVDKFGKSIGADKVIARLRKAEEEKRTASRQAYVFFNNKASSIVSYSKAKDYKFDRDDKETISVKDCISQLEKWAEKQAEQFAETTPQGQRLAFLKALQNSAKDKVKEASVSDELKATLDNLFKMVGVFWERKIPASPRK*
Ga0098047_100381812	F039829	GAG	MSLKVRDVIRELERFPDDYKVSLETYEEDKDNGGGYKKTNCMSVGKDDDAERFVVIR*
Ga0098047_100381813	F049689	N/A	MFGRKVNNMSNELYFVIRVWNFPHNDTIQYSIVSDKAYNLDKAMNIKIAQDIMETNENISFQIQKLNLMNVGKSKIAS*
Ga0098047_100381814	F002330	N/A	MVILDIMLKYIKQINKALKIGDEFTIYYAPTFTKDGQEQTSIYDAHQYEVNVRSAIWDEGCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYLNKQMYVWKESK*