Scaffold Ga0098059_1153193

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1153193
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 907
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_11531932	F029745	GAGG	VASKAPRVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGDSWDVYTRRDTLEVLSRANPR*
Ga0098059_11531933	F058991	N/A	MLVRWHGARDDAADPDDLGIVVKMPGENWHGNYHIAWSITDTVSHHSPEMIEESLYQGHLEIV*
Ga0098059_11531934	F027156	GGAG	MIPKVGQLLRWYDNFTFDDDGPNHDVGIVKEVQFEGVNFFDHDAYEYVVVVDWCKGPHHSLHDQEEWEESIRTSEIVVV*