Scaffold Ga0098059_1038188

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1038188
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1941
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10381881	F021674	GGAG	MERETYNTRLKSNPEDIPVGSLLRVKKHCRKNITIRHNGEYGILALSDSGKYITHDVLFPNGTRCIY
Ga0098059_10381882	F015346	GAGG	MNPEWKRYKVGDLVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSKQYPVRYLAEL*
Ga0098059_10381883	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIKELNKSYWNVLKPDGDTVFIHKSHLTTRMY*
Ga0098059_10381884	F059941	GGAGG	MKLGTLVRFAAYGAVMDTGYVSKYDEDPKFMWVECVKMGPQRVSKDSTMLEVVSEAG*