Scaffold Ga0098059_1037631

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1037631
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1955
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021552	Metagenome / Metatranscriptome	218	Y
F037762	Metagenome / Metatranscriptome	167	N
F101007	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10376313	F021552	GGAG	MIRHLIGKSLSTCTKDILDGTIDEGEVLLICTSTKHPFNDPNHFYDMRYFDSTEEAELLQRLWKQGRIHQPRMLSDSYNHGKEEYLFPYDNYRHQSWFSIIDQALTDLEDKPEEYSEELEDAMIKILGGPDYNDGSDYHLQKKEESE*
Ga0098059_10376314	F037762	AGAAGG	VSNWKNFERRVASKVGGKRIPITGRKCLDIDHPTLDIECKYRKNLPVWLFKDAWGQANTGSGIPVIAVGEYNSSDIFTIISIDTLVKLLERSIIDVNDG*
Ga0098059_10376315	F101007	AGGAG	MMVRHPLRNFFSSPFDVDWSEAYKQSMIPEDGTIIVQRELVEKKYRVKHESDGTVKYIPITEEVVDGSD*