Scaffold Ga0098059_1029410

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1029410
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009856	Metagenome / Metatranscriptome	312	Y
F048956	Metagenome / Metatranscriptome	147	N
F072209	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10294101	F048956	AGAAG	VTLHRYLQKNYGDLRQAAHRIAGRDGDDLLHEVILQLYQTKDETINGLLDRGQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSKQIEGWWDGDGVAAHRDQLLSHIEERLADLPWFEAEVFAIY
Ga0098059_10294104	F072209	GGA	LHPQATRAWFLAELGQLIKFVDATKTIQDDAEMKETARALMEEFPCFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPERDHYQRHAGSVEPRKAILLTVEDLIDLGEIKPND*
Ga0098059_10294105	F009856	GGA	MKYWFEVEDAQRWGLPAAAVLAHLKYWIDRNTAAGEEPCMTQGIKEMSEYLPFLSASQIKRALGKLEAVGAIYKSQNGFDRRGTFCLGTKPAHALDETGPSMVQKRPIDEPNLARVHIETNTSKRTKSSAREELDYQRPTEEEVKEYFRDIGGTDVADQLGQEFHTHYESTGWYVSGTPMAKWKPKARSWLSRHRNKQSNERRKGFNPSGFTPDGLKDFIDNG*