Scaffold Ga0098059_1024361

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1024361
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2467
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10243612	F060433	N/A	MEFSSIIETLLIAALLGMGGALFAFFKKMSATQSDLCDTVARLQKTLIILAKAVDRQSNRLHPDEANSELDDLVKELLDKP*
Ga0098059_10243613	F071758	N/A	MEEKCPKCKIIKYGYTDGQHSIFICFKCGRFDGISGGDDTFVAKIIEEPMSLLIMIEQKILVPIS*
Ga0098059_10243614	F102085	N/A	MATSIYIFDSDKMFNAIYREHVDDIEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRMDRSIVHFRKDNAKEWIEGDEKLVLHGKIRYNHKRNQLEFFPRLLRKPLLSMRVGRFFGNKKGKCYINYDKRYYDFKNDRMLFILENENEI*
Ga0098059_10243616	F001235	N/A	MTKKLWERHQSDEFTKVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNEKGGFMKTDPFWISMRKKHGKDWKQIMGGYKKSNRR*