Scaffold Ga0098059_1023185

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1023185
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2532
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F041145	Metagenome	160	N
F059445	Metagenome	134	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10231853	F041145	N/A	MLVKLCEETEPTPKQLLKMSGEKKADVTDLFTPEMIDAKFYLQEVKAEDYDSYSVIDIMKGCNTIWRWRLKVKKEGWPDINGIEYICGEFLKKNQKIAAIKKYRQYMIDRGKDVGLKESKEWADKLSIKMGLD*
Ga0098059_10231854	F059445	GGAG	MNLNELVDSLIELSCHEMPDEARKSLDDAIDHIVSNMNDNQLKDVLGKTIIDDIESRFPKHTWKEEGDEEEIKAIKSLMDGNIAIA*
Ga0098059_10231855	F098210	N/A	MVTLPLPNEVTIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFNFEDNYKVRPRTNIERELDKLADLNDKEKNIKPVGGDDGQEIFNELSQLVWDLGMSLPSWDDNKDKGNKNDKT*
Ga0098059_10231856	F012123	GGA	MIKRNPCRVKKVVYDHEGMKIVERRGYAQERKKHDGIDQVFVMEGGDTGIGYWYPSSEVTLTKGKWTNNTGKVVSKKSFWRRAK*