Scaffold Ga0098059_1022698

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1022698
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2562
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F016474	Metagenome	247	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10226982	F016474	AGGA	VVFLNLNLNSKGFSQMKTETYLIKHDYDKDKKEMISKPCKVEMRWKIYDSFACLEIIGFEDKSETIKHLLYCHKDQTINILNSLNEQIDNVQDLEPCNKDRFFFNESVGVQWGLHGQLDLEDMIASKKEGS*
Ga0098059_10226985	F002077	AGG	VTNLLPQTKNSREISPQQEQFLTNLFENGGNVTDAALAAGYSKGSVTWLKNSLADEIINRTKNVLSMHAFKAATRLVTTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAIHGVVLLPPKKGVTIDG*