Scaffold Ga0098059_1005815

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1005815
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5410
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026408	Metagenome / Metatranscriptome	198	Y
F039876	Metagenome	163	Y
F072251	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10058151	F072251	GAGG	MSHKLIMESWRKFLKEGISDVVYHYTSGLNKAAQILEENKFMASGGFTKEVETELGKGKLYYFSTARTPVNSYTGNYPQGAIFKLDGRALSEKYKGAPVDYWADPDRGKSSKKAANPGPQGTDAFEAEDRILLNEPYIDDADTYIDEIHFALPIYKKEKGMFDDEPKRKAR
Ga0098059_10058158	F026408	GGA	MLNRKGMTLLLVLVMSALIGLSAMLLFSTTNMEMMIAGNTRRINQAKISATSGLSHFTALSLNYNTLRRRAGGLQTLQILPRTQLSPKTSYEVNVHFSPRLSAGQYVVESIGYYTKGDKILAMHPIKALFEGEE*
Ga0098059_10058159	F039876	GAGG	MLYKSLFLLVFANMFNQAYQMQNITCPKWVPGTNEVLPRGVTLSPELELKNRVRCYCEVVMPQERGCIANNIPKNLCKARTAAWVEDNLMLRENFRRAQAPAPLPQRDRMINVEP*