Scaffold Ga0098059_1005002

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1005002
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5889
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022523	Metagenome	214	Y
F039876	Metagenome	163	Y
F072251	Metagenome	121	Y
F077384	Metagenome	117	Y
F083398	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_100500210	F039876	GGAGG	MIYKSLFLLVFANMFNQAYQMQNITCPKWVPGTNEVLPVGVTLSPQLELENRVRCYCEVVKQKEQECISRHVPANLCKARTAQWVEDNLRLQQPLMNTNGIMRLPQMDRMINVSP*
Ga0098059_100500214	F072251	GGA	MKLLMEQWRKFLKEGISDVVYHYTSGINKAAKILEDNKFMASGGFTKSVETEYGKGKLYYFSTARTPVNAYTGNYPQGAIFKLDGRALAEKYKGIPLDYWAVPEKKKGGSSKKAANLGAQGTDAFEAEDRILLDEPYINDADTYIDEIHFAVPLYKNE
Ga0098059_10050024	F083398	AGGA	MIKVGDIVFLKRKGGLLNDQPLQSRLGLVIKDHREKGAIPQFYVKFNQNDPKWYYQHDLHRIGGERRKDV*
Ga0098059_10050026	F022523	AGG	MKIGDLVEFTYGRVGGQIDGIGIFAERGYYGLHKVLFMGKGYWVPDACIKVISMKRKDPANEPLLN*
Ga0098059_10050027	F077384	AGG	MFQKGDFVVEYERVDRTGDLKFGVVMGAEKGFQDMIVLDVVFPTERLYTFASHCQPYEEWLNENGF*