Scaffold Ga0098059

Basic Information
Taxon OID	3300010153 Open in IMG/M
Scaffold ID	Ga0098059_1003536 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010153 Open in IMG/M

Scaffold ID

Ga0098059_1003536 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7168
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7168

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (55.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F022525	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10035361	F013234	N/A	MANIKYNKTIEKKILERLCNGESIRKICKDPQMVSWPTFSQKLKDNEKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ*
Ga0098059_100353611	F004629	AGGAGG	MIPSKLTLEELDNYFQTATYVERYMPSPLNMKNKRTEMFTLIDRLYGIGKDKDSYKGEDKPRIKIRLNGQQLQIYEFCILLMVKGSEKDRDIIGLRHFPFKRSFRELRKFFMPDSHEKVRQAYYKALLELLKIYNKHGYKYICK*
Ga0098059_100353612	F011253	N/A	LAGGVPKLKDRSIDIKNIVKMIAKSKSFPYSNAVNKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDSQ*
Ga0098059_100353613	F001839	N/A	MKYFEKIDKDLLNNRALNSHEKLIYVICKSFENAPNKCRISHKYLMLRTGIKTKATLIRYLDRLTLFGLLARKQIDNGTCHYVFDKPTMQEYILHNTNKRRKISLSKNRHKRNLDTALSSPNVINMGKVIK*
Ga0098059_100353615	F004990	AGGA	LELDMYGDRKKKCCSCEKGADLKEGSKYYCCEHYAIHILGKTMAQIEKELNDPITK*
Ga0098059_10035363	F022525	N/A	MELKNMNINNLKIIVKPKYNYGYKVGVTVHINNKKFPTELNHVYAHNKNNKAVQTALIDGGYTEDHQLVASALKKEMEVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098059_1003536

Overview

Ecosystem & Geography

Associated Families

Sequences