Scaffold Ga0098059_1000367

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1000367
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30074
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F043442	Metagenome	156	Y
F064085	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_100036723	F001066	N/A	MADDIFKIKPLDKHAAKVVLDGHKTISPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFVALINDLDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISSKITISEEKTFNKMGDIESIFRQIKEKKALE*
Ga0098059_100036724	F043442	AGG	METLQECKVKNVVLSMKYSYANISKFHSKFQKIFVVAGTNTESDRYYELLKKHKDLYDYAIQFDKMYSMDETIKHYHKEREIGIDWTLPVLQENYINHLSRLNLEPNTYVCLGEIHGRLETEDQMRKLPANLKYHGLAKGRYVTQTRQFESMDTSGWISAAMSKKCEVWQNNSTNFMFFGEKGKSMIPLLNHACEVHKEYLEICGIDKNKLIEGEYYTLLKAPFALLYMPMCKQLGILENNFNM*
Ga0098059_100036726	F064085	N/A	MTDLKVVASGVCEECEHSQKDHEGNTTCDVDGCDCKNIGSY*