NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098061_1246882

Scaffold Ga0098061_1246882


Overview

Basic Information
Taxon OID3300010151 Open in IMG/M
Scaffold IDGa0098061_1246882 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-15.59Long. (o)-75.37Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F094392Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0098061_12468822F094392N/AMKEIDRLLEQWIPVNTIIRAEIRAAIVKEINNHKLNTTYYR*
Ga0098061_12468823F001802N/AMQKIKHLKNDYVQLGKLIYKPYTICAIPANFGCIEFNEKEGISEWFNYKGYTYILDSIAKS*

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