Scaffold Ga0098061_1186645

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098061_1186645

Scaffold Ga0098061_1186645

Overview

Basic Information
Taxon OID	3300010151 Open in IMG/M
Scaffold ID	Ga0098061_1186645 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	739
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-15.59	Long. (^o)	-75.37	Alt. (m)		Depth (m)	65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F004179	Metagenome	449	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_11866451	F001039	GAG	MIDYNIVLYIGIGLIVFGFVLFLISIHFERQAEIKLFKQQQLSKSFEK
Ga0098061_11866452	F004179	N/A	MKLNKDDLRNKEIILELKNVYGKDLIYPSCHIANAMIKLKNAKTFTKNDLNVFRALGLIIKWKASQI*

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