Scaffold Ga0098061_1146266

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098061_1146266

Scaffold Ga0098061_1146266

Overview

Basic Information
Taxon OID	3300010151 Open in IMG/M
Scaffold ID	Ga0098061_1146266 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	858
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-15.59	Long. (^o)	-75.37	Alt. (m)		Depth (m)	65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F037260	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_11462661	F037260	N/A	MAKKKKTIPFHIAHNYKHWTSDQGYKFWARDEEDAKLYLGVIGAHLGSLKEVEVKNV*
Ga0098061_11462662	F003091	AGGAG	MLPRKPITKPGEGKERQKYVSQEQYLEERYQISLGLKGPKRLEDESFEDFHVRRKAENGLLKEYLRGVWVKNED*

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