Scaffold Ga0098061_1076344

Overview

Basic Information

• Taxon OID: 3300010151
• Scaffold ID: Ga0098061_1076344
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1270
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -15.59
  • Long. (^o): -75.37
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020814	Metagenome / Metatranscriptome	222	Y
F045695	Metagenome / Metatranscriptome	152	Y
F061900	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_10763441	F020814	N/A	NTGRRVPARIGNPPNKAIYPEWWQDGKNLMKLHPSYTERRKYEQKKQQKKSK*
Ga0098061_10763443	F045695	N/A	MKDKRQLFLNIWNKKNSPMRDSIKAKLANRGIEPTELNCYEYWMGYIRPWADIRGNIHHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKFRK*
Ga0098061_10763444	F061900	GGAGG	MTDSSSDSDSYSQRDEMAAMAGELMEAKMQTAQARNQMTHMLRMGNFHLEIVPNKDIDIEKFFNKTMDNIFDRFGKDAFEVKVSGMEN