Scaffold Ga0098061_1029250

Overview

Basic Information

• Taxon OID: 3300010151
• Scaffold ID: Ga0098061_1029250
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2223
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -15.59
  • Long. (^o): -75.37
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F101007	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_10292501	F020384	N/A	GRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVSSDRGRPSSVRWDVAAMMAAPKGGPDRNWWRPPPRPLPVKHYTKEELENEYPAFTMSKKREADA*
Ga0098061_10292502	F015347	GAGG	MLEVAAAECDEMCGDLYGDADNPDMDTIYSAAEEMRRFADNLNNIADTLMVEYRKMDHHQHLIDLDDLRSESYAH*
Ga0098061_10292505	F101007	AGGAG	MMVRHPLRNFFSSPFDVDWSEAYKQSMIPEDGTIIVQRELVEKKYRVKHESDGTVKYIPITEEVVSESD*