Scaffold Ga0098061_1006709

Overview

Basic Information

• Taxon OID: 3300010151
• Scaffold ID: Ga0098061_1006709
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5195
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -15.59
  • Long. (^o): -75.37
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F033759	Metagenome / Metatranscriptome	176	Y
F061776	Metagenome	131	Y
F096198	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_10067094	F033759	N/A	MIIKALILTTLLTNDPTMIIAMPPEKIEARKRGKRSKRDRRRGGGGLR*
Ga0098061_10067095	F096198	AGGAGG	MNYKKYPIGGMLDGAPHEQGGIPIEAEGGEFIIKRNSVNGSTLDMLEYINEHGDLPMSDARNRSKR*
Ga0098061_10067097	F007012	AGAAG	MAIIFYCYRCGQKGEFETKKDMKCDCGHYINRRNNTKDHVNMRTTWSGTTKVEFSQTTIEEDIASRNNQ*
Ga0098061_10067099	F061776	GGA	MTVKNIIEQIETLYGRKPHEYVKQLINDALLDIAAKKQHYTVSAKTDLASGQRWYDLPARTIDVIKVEILDTSSTTPRYNLIPKLADPHKLLKSDTDDSGTGDLT*