Scaffold Ga0098056_1061204

Overview

Basic Information

• Taxon OID: 3300010150
• Scaffold ID: Ga0098056_1061204
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1297
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098056_10612041	F054095	GGA	MEMIPQWKMNGKDMRFNGETEIGIVEVRDLFDDLVVTLWVDQEESGNITVKSLGGVGNGRYDVQVVARKKPVEEGEEWKS*
Ga0098056_10612043	F019151	GAGG	MIVANERAKDGLELFDMDGVQSFEMKNETLKMCATADGALWQSVRGLTIKDSGGNALFTLSWSENGVCGSLYDDELTVEIEEEF*