Scaffold Ga0098056_1025369

Overview

Basic Information

• Taxon OID: 3300010150
• Scaffold ID: Ga0098056_1025369
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2094
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F067210	Metagenome	126	N
F079326	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098056_10253692	F010471	AGGAG	MMQLTLTINTNAYPEYDKHQLNEMLGLLPLWVAEHVGNDDSTDLVQFMTDRYGFGKLYEFEGKINEEGDYISKYDDDADMPYIGKMITKHGYAYFYDCAIIALPQPNGKHFITRMD*
Ga0098056_10253695	F067210	AGGAG	MITKDAIQAYNANYSGLRGAKILEFYMEQCDFDPHQYWPTFRMQKGKEVFKFILSQDPEGNGSGFAFIEAV*
Ga0098056_10253696	F079326	N/A	RYYIATVSSDGRHSNQRWLTNVDDLTDVMVQYVNEGYKVTIEEEIHQ*