Scaffold Ga0098056_1024802

Overview

Basic Information

• Taxon OID: 3300010150
• Scaffold ID: Ga0098056_1024802
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2119
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011718	Metagenome	288	Y
F032994	Metagenome	178	Y
F053639	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098056_10248022	F011718	GGA	LNDLTKHLISQYLPYLIAFLLGVIVAWKGCGDTSGKPVTTIIEKPVPTVEYVDRWRTDTVRFVSKEFVTVRDTITSEIIVKRLDTLFLVDTIKIVEAWLTEIAKYDTTMEQESATLEFSWQNYQNRSENLKVTYTPKKVPLKWALGVHANAGLLSDFKASYVPLLGIGVQGTVNKGYYGIDYGFNGNHYIGVRVGRNIISR*
Ga0098056_10248025	F053639	AGGA	MSLLRDANNNLSSKRVAGYVVLSVVLIAFVGDLFEKMEINESVANTLIMSAAALLGIGTFEKKH*
Ga0098056_10248026	F032994	N/A	MNTIDHPPVRTYWITFDGEDKDSVIGYGWTDPDQRTDTILVWETYIDEVVWLARLAEYGIIPEFDEQGNLFL*