Scaffold Ga0098049_1199986

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098049_1199986

Scaffold Ga0098049_1199986

Overview

Basic Information
Taxon OID	3300010149 Open in IMG/M
Scaffold ID	Ga0098049_1199986 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	612
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)		Depth (m)	48
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013815	Metagenome / Metatranscriptome	268	Y
F030241	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_11999861	F013815	GGAG	MYSIQYEKTLPPWHIGVDKVEAETKEDALKEFYKRHDSTEDRVRSV
Ga0098049_11999863	F030241	N/A	GHVGNNKWMPVSNGFKNKAQAQKWAKSQDNVDSAARGEIGAV*

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