NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098049_1129373

Scaffold Ga0098049_1129373


Overview

Basic Information
Taxon OID3300010149 Open in IMG/M
Scaffold IDGa0098049_1129373 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023213Metagenome211Y
F023716Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0098049_11293731F023213AGGTGGMPFKVGDMLKYHHPSSADEENEQMDLYHFGKDHLDGKLAVVLEKSLTAADGTIDYLCYIDESKMWLDGEF
Ga0098049_11293732F023716GGGGGMKRRKSWEVKPEPLFRVPIDAATNGYIEGTEARGEPTVKVGDLVRYIVPDDWELHAIDAPIFTDETALGVIRSINWMLIATNKGAYYIPEAEVYWSINGSTTKHTHDSLEVANAV*

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