Scaffold Ga0098049_1043829

Overview

Basic Information

• Taxon OID: 3300010149
• Scaffold ID: Ga0098049_1043829
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_10438292	F020110	N/A	MSTHLEVKARLSYARAMLERNIPTNTLATLISSKFHVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFA*
Ga0098049_10438293	F023484	N/A	MKINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNEWGRDQAIDADQVAKCKTFIRNHS*
Ga0098049_10438294	F022313	N/A	MTYHYKPEQEYESTKLERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPQTSYDFFHQ*
Ga0098049_10438296	F098218	GAGG	MTSFSSWSKRPEEMRAAAKTRAIAALHKKHSKGLTTLERAYLHALKT