Scaffold Ga0098049_1008754

Overview

Basic Information

• Taxon OID: 3300010149
• Scaffold ID: Ga0098049_1008754
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3477
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035329	Metagenome	172	Y
F090495	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_10087541	F035329	GGA	MATRKSLVIVSGLFQELNTSSDKLDFGGNTTADLTENTNLYYT
Ga0098049_10087545	F090495	N/A	MAVQILSRRSSTLYDRPFPIRLGAAELAINNNAGEPGLFFADNTASPSTGLVKVGPITISSTAPNTSAVGFTSSSKGESWLDTASTQIHKIFDGSAWQTVKAVASVAAGYPANPVDGQLHYNTSTSKLTIYLLASTSWVVIGP*