Scaffold Ga0098043_1109045

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1109045
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 803
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038713	Metagenome	165	Y
F041144	Metagenome	160	Y
F066153	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_11090452	F066153	GGAG	MNKDNQKIFMDWLDTCPIVEYRSIENVEEDSATRIYTVDFAVVKENEDD*
Ga0098043_11090453	F038713	AGGAG	MIFVKFTIDYGGYEYFDYAWFKDYGEAHYENGESITDKDIIQEVYGEGRSDEDFEENFNKETNTYTDYNDDVISVYKVQEMTQKELDVLVKMGVLHR*
Ga0098043_11090454	F041144	AGGAGG	MIDDAITTVGFALQSYVNTCYHEDTEENKAEREELTLAWSIIKKHLKEYEE*