NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098043_1083042

Scaffold Ga0098043_1083042


Overview

Basic Information
Taxon OID3300010148 Open in IMG/M
Scaffold IDGa0098043_1083042 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028034Metagenome193Y
F094108Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0098043_10830421F028034GAGGMPRKKKKSNNYYTKIQDVAICAYNKSDSSVQREKIYRRFIYPAFLKLSENLINKMKPTYILNKCSFQDLQTDLVTYLTARLDKFKPNAGKSYSYYTRTSFNYLIAENQKAYVKVKQNREPIDLDEQRNIPTE
Ga0098043_10830422F094108N/AMIILIILSILFLLGTIYFAYRAYVLAGLMADSEDYYEAVAKTNQYMFNRITQTYNAMKRIDRLEAFEKDDEAGTTFSLLKEVIEELKEEFDAKEEEKK*

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