Scaffold Ga0098043_1025492

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1025492
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1878
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10254922	F010532	GAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDKPMEISEVDIIHRIEEHMSYMVSSYLTKPYEGIGMEQEALKQA*
Ga0098043_10254924	F010318	GAGG	MMNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSGQYEGDQGETDWKWSAQENILTEGWSLVEGLN*
Ga0098043_10254929	F010571	AGGAGG	MSNIITETYADKLYEELYDKHYEEVGKTTDDVGYIEKEAERLALIDLDNFEMEG*