Scaffold Ga0098043_1023016

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1023016
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F061779	Metagenome	131	Y
F082544	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10230164	F082544	AGGA	MKDKKTQGIASVIPINQYYNDISKIIDDAEWMGDDETVNLYLPEKEQIKRDMDDGELWYPNF*
Ga0098043_10230165	F004493	AGGAG	MLKNITTNKELDFTDSEWGQLIEGNGLLLTWFIEWNKGDRQEANILEFFARKYQQSSGGEPYPMGGKVALDGKYVSSGDDPLEPYFLINTDDGVGYIYPYAFVALPKKKGGHSIVRMD*
Ga0098043_10230166	F061779	GAGG	MLPDEMEAEKNRKMILAQADEIEILKRNVRQLQGQYQSALIHNKRLIEQNAEAMAIIGHK