Basic Information | |
---|---|
Taxon OID | 3300010148 Open in IMG/M |
Scaffold ID | Ga0098043_1021483 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2068 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F019646 | Metagenome | 228 | Y |
F053980 | Metagenome | 140 | Y |
F076077 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098043_10214831 | F019646 | N/A | ITYTSDCCGAYVHSDAELCPTCLEHCEVIEDRVDYDCSEAVHFEASLDFYGAG* |
Ga0098043_10214832 | F012114 | GGAG | MSNNNCVVYPRKHVWAVYDMDGQKIGEVGAMTEIEARQKVAQHVMIPFRLSHIEE* |
Ga0098043_10214834 | F018906 | AGGAG | MMKTCKVNPLKLNETRFEAEAHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILQYPIGTDGEITAELIYDTQINRDLGCVDVIGWLDFGGVDATLKQIRNYNTGEYMINE* |
Ga0098043_10214836 | F053980 | GGAG | MNGYELLAQFEKEIKECFTVPNEWIPEDFRDNRTDCVSLADIERKCDERDKCTLSSFEEESIERAKRVQAYRSQVERTGEIEYIPR* |
Ga0098043_10214837 | F076077 | AGGAG | MFNEQEKLEITIDGLRSGDIFMNEDGIPVDEYGDPIFEDDQ* |
⦗Top⦘ |