Scaffold Ga0098043_1019365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098043_1019365

Scaffold Ga0098043_1019365

Overview

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1019365 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2194
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033764	Metagenome	176	Y
F100990	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10193653	F033764	AGGAG	MHIDKYVVNNIGTKWTNGKRKKGCLLASLDGTDISFKNLVPLLQQWNESVNGEWSDRTVELVINVKEDER*
Ga0098043_10193656	F100990	GGAG	MGKNYDYTHIFDGVYSLTEYTPLPMSEQLFWSRVGWLQQAMIRADNFEFRLLWFNKLQELMKLQP*

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