Scaffold Ga0098043_1018699

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1018699
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2237
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032243	Metagenome	180	Y
F034754	Metagenome	174	Y
F070308	Metagenome	123	Y
F092880	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10186991	F070308	GGAGG	MKVGNLVKRRDPPWGTVDQLGLVIDMETVEQAVYNPKVAKVQWLGGEYPPFMYKPD
Ga0098043_10186995	F032243	GGAGG	MSSNYEMYGAEEGWEHPDVGDLVEIASKSSLKTEVGVVVPPNDYIKNDHLWAQVLLDNGKMKVYPKRELKVIQRGE*
Ga0098043_10186998	F092880	GGAGG	MKAGDLVQYNSRLLLVLRQNPDEYGYADGWWQCMEVGTNRVRIYSPTQLTVIKTEAQFYL
Ga0098043_10186999	F034754	GGAGG	MKVGDLVDINQQRGTGSYKVTIPRGLGVVVRFQELEDLHYESIGTINLGPLVHVLLNTGETEGFSPQSLEVVK*