Scaffold Ga0098043_1014095

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098043_1014095

Scaffold Ga0098043_1014095

Overview

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1014095 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2617
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F020919	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10140951	F020919	AGGTGG	MPDLRIKTANENGDLPKDSGRSFKALTLFDALKNTTVIKKYNEQFQKEFGRPSIFASQIKESRS*
Ga0098043_10140953	F008252	AGGAG	MSKYSGLWFFYDDDISIYWNRSQTFNVWNNGKEVNCFTVVGTMTSKQAEEQADEWLADVLQEEKLRHADAF*

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