Scaffold Ga0098043

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1014054 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010148 Open in IMG/M

Scaffold ID

Ga0098043_1014054 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2622
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2622

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008915	Metagenome / Metatranscriptome	326	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10140542	F026438	N/A	MANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVAEVIKSEKIQNKINEYKPLDEKDEQKFKFIVKLAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGNPTLTKTKGWTYSNVKCPDRPFYSDVQQVALYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLNTLAWLCCPDFSDIKKKSFWWTGVAKEQIDRLLKHYD*
Ga0098043_10140543	F046315	N/A	MNKKFMEYSVKSSYNSEFVESYMKKNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGDMVQIECIGTLFGNGQIGMHKKNERHKINIHPKYASFQAIECLVESKRGLMMLFKPTKSIDRNANNRTVICQDKKTKVHWFGFLEPNSNGKFDVIDKSQSTGKTIGKLAENIQISWSAEVKAAYYPTIYNT*
Ga0098043_10140544	F059875	N/A	MKVFVLIFGVITNDGQIDLVKVPNSELKNINSCEKAIEKNLKWVDNPNFEQNSLPYGFYTYKNRVVMLQYCHLEGVESE*
Ga0098043_10140545	F008915	AGGGGG	VNNEVTLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKPGELYILIIDEAPKFKILGFVNSTFVLGQEQWKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098043_1014054

Overview

Ecosystem & Geography

Associated Families

Sequences