Scaffold Ga0098043_1003844

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1003844
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5277
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F009562	Metagenome / Metatranscriptome	316	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_100384410	F009562	AGGAG	MLTIPLIRAEDDSNLTPIERTTLACEQVITALMMQSTIADPSVTAAEREKYTTLSVATIIPAEA*
Ga0098043_10038442	F054844	AGGTGG	MNVLKAGTLVSWRGSVGLVMGACKKRWAKDDDVWVMWTNERKPKIESCRFLEVLNASR*
Ga0098043_100384422	F004771	N/A	MYTHETGLVGIVVDRHPKAISTTPAQLGIMWTGGSGKMDWEPEGWLEVISEASNKKETRC
Ga0098043_10038445	F005547	AGG	MMKVWVLQGSYEGELFSSVHLTEKGCALACINDVLQFHGVDDKDTALSVMNDCYAYTETDGEQTEPFEWDQEKMKNMSSKELWKIFSEWVEISWDRMADRSYNIDAQPMEIQA*