Scaffold Ga0098043_1003357

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1003357
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5638
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F030088	Metagenome	186	Y
F039588	Metagenome	163	Y
F047679	Metagenome	149	N
F055653	Metagenome	138	Y
F057372	Metagenome / Metatranscriptome	136	Y
F069999	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_100335710	F015092	AGAAG	MLGKIKSKLLTKLFIEWVNDEFDVELLEASKVMIQQRQDAVNTLADKANPPRPIGFTIGNK*
Ga0098043_100335713	F047679	AGCAG	MINLETSTAPIIADQEGDHYFMVGDTVYYLNEFMKTLGNRDFDGVAHITNQGGIGIKVDEVNEEVEYTIFTASY*
Ga0098043_100335714	F030088	N/A	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATKKFDKDLDVLVHPKRGRLFQVPKNVEQFITVV*
Ga0098043_100335716	F039588	N/A	MEDLKFKTAAQVMNNSNTPDRNADFYTNMNKGFAMAINGFRISVQWGPGNYVDNEIRYGNHDAPMQHNSWGCDTAEVMIWGRKDAPLFDLVPFDFDTEEYDKEMFEAQGGHIDQVFGHCSSDCVAKMIGCLAHSDNDDPRRAIKQIYDASF*
Ga0098043_100335718	F055653	N/A	MREKMIKDINNPQFNIANVPFDERIDCLNQLSDARDNGVITQNEMLNIACVEWFDQYKISKLINNGT*
Ga0098043_10033573	F069999	N/A	MSILNDLIPEVKELLEADKEKFPNLHKSITRDLQNAFVTTDVKVSTANYLIGYAETANIKFESNSFVLKLYEIFGR*
Ga0098043_10033575	F057372	N/A	MRNELFDILEEMVEHTSIDIIFSELCQAMSTDELYANVKHLDQHLFANHFLTRET*