Scaffold Ga0098043_1000109

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1000109
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25927
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030245	Metagenome	186	Y
F084850	Metagenome	112	Y
F106100	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_100010910	F106100	AGGAGG	MDMVTVLIPGGFKPPHVGHYKFFMHYINNPEVSEVRIFCGERQRKVGDDFSVSIEQAEAVLRLYGILDNPKVVYQRAKVRKGQNGHYTNPFADVYDWAEENHDKTENQISLGLSSKDTGYQAGFLGYFKSFANIVEIQHTYEQEHLVSATEFRGALAAGNSIKKFIPEHVEEEEIIKIFS
Ga0098043_10001092	F030245	AGGA	MLLFLLSTALAEPLMVHLEEGESAPFPGRLMNDEAVANIIAGREMSAEQCEIQKEFQVSLTKAELQLQIDYLNAELETETIKSSTLMELRDQEIASLRKEIKPNKTMWAFFGGFLLASGTSLGTYYAVRNIDANN*
Ga0098043_10001093	F084850	N/A	LETRRIKKWKIYINAAVVVAHAVNVQHALRNNMATWAKIKLWCFHNWRFLVIGGAILLAYLLGGKKVKALETQLSMARDLYKKERDAIEGASDKKSEMLTVANLKYQRALEIAHKTAMESSDHAELIKAERIRRLVEDNRENPEEIDRILNEEFGILVMDPKDKS*