Scaffold Ga0098043_1000085

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1000085
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29582
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (58.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F031512	Metagenome / Metatranscriptome	182	Y
F079325	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_100008519	F031512	N/A	LDKKHQGYVQEIHKHGGVNLEASKLGRDYKDIQRDIIVADIENKKKD*
Ga0098043_100008537	F079325	AGGAG	MKKTIEKKVRYVQQMDISEPDKDQIEPICYLNVFEDLGTNQKYGWKEYDYMRTKQNLKSNDWQLRDKMWVSFVPKPEQILHYGEPITIVQRLKKI*
Ga0098043_100008547	F002485	N/A	MKTNKKGEKMKKQIDNKSLYYVEQGNNTIYYSYNTCVAVTNPVDTYVSENVWSVTTGKHLNRIEEITGSNREYRMKYNDFRDFCIKNNINKTYN*