Scaffold Ga0126319_1579768

Overview

Basic Information

• Taxon OID: 3300010147
• Scaffold ID: Ga0126319_1579768
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1307
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Big Basin, California
• Coordinates
  • Lat. (^o): 37.1932
  • Long. (^o): -122.2204
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002111	Metagenome / Metatranscriptome	592	Y
F008327	Metagenome / Metatranscriptome	335	Y
F019193	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126319_15797681	F019193	N/A	VLPGLAPGDKFFLNDGKTPLSLADAAAGIKTIYQDLLDLAWTEARARGDKLPPSGQKNIPPTVPGQQ*
Ga0126319_15797683	F008327	AGGAGG	MSMPTGDTPEKVNDFYLYLNSRQQTTSPVQTWHVDWFSLAWLWGFAVVLIVVLVFWIRQYRTTRERTGIYAVDSFGGWTTETARPATRFFLLFTAIVVGFAGALIFGHLVWGQKF*
Ga0126319_15797684	F002111	AGAAG	MAVAAPPYVSYSSMTETRIPASLWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVHCYTTWDTAGQLEVFLERGYTFERLLGAIGSGLSAARSLVMEKVF*