Scaffold Ga0126319_1085453

Overview

Basic Information

• Taxon OID: 3300010147
• Scaffold ID: Ga0126319_1085453
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1239
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Big Basin, California
• Coordinates
  • Lat. (^o): 37.1932
  • Long. (^o): -122.2204
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009190	Metagenome / Metatranscriptome	322	Y
F044819	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126319_10854532	F009190	N/A	VRNVKPDIRPQLREFLAWYEEVLGRIEAGAIVAPGEQQRLTEEASAVAHLLDLFDSRANQPSS*
Ga0126319_10854533	F044819	GGAGG	LSDRLDEGKIEQLRAWGAGLHADGNHDLRATGKAILLLIEEIERLHVDLWNAKTQEQKRPATSDADNGVQASMDQTPGARLSRVHGRS*