Scaffold Ga0126320_1428097

Overview

Basic Information

• Taxon OID: 3300010146
• Scaffold ID: Ga0126320_1428097
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 981
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Jasper ridge, California
• Coordinates
  • Lat. (^o): 37.406
  • Long. (^o): -122.2269
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F038139	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126320_14280971	F000818	AGGAG	MEAHNKPQRRFLIEKLEERIAPAITSVHINGGGNTPNGNANGVPTTNINPAGHAPPGQNP
Ga0126320_14280972	F000818	GAGG	MDQTKETKGRFRIEKLEERIAPAIVQVNGGGNVPNGNANGVPASNPAGHEPPGQNK*
Ga0126320_14280973	F038139	AGGAGG	VSAERSVESRPETRKSRFQIEKLEERITPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK