Scaffold Ga0126320_1055172

Overview

Basic Information

• Taxon OID: 3300010146
• Scaffold ID: Ga0126320_1055172
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 666
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Jasper ridge, California
• Coordinates
  • Lat. (^o): 37.406
  • Long. (^o): -122.2269
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035210	Metagenome / Metatranscriptome	172	N
F094356	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126320_10551721	F094356	AGGAG	MSAQENKEKMRRLLEEAFGEGKTQLVDELLHSDFVCYDPNSEAGEIRGAETIKG
Ga0126320_10551722	F035210	N/A	VPFHSAQFALNGMGDEHIKEASWVVQSVTGASAYLYGVDYNNEKFREELRAMVEYIKRASQEEGG*